PCR Array Data Analysis

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RT² Profiler™ PCR Array Data Analysis

From Ct to Fold Change in Minutes	Web-Based
From Ct to Fold Change in Minutes	Downloadable Excel Files
From Fold Change to Biology in Minutes	Gene Network Central Pro

New! Web-Based PCR Array Data Analysis: From Ct to Fold Change in Minutes

New! Gene Network Central Pro™: From Fold Changes to Biology in Minutes

This integrated web-based software package for the PCR Array System automatically performs all ΔΔC_t based fold-change calculations from your uploaded raw threshold cycle data. Simply providing the array's catalog number annotates the results to the correct gene list. The web portal delivers results not only in a tabular format but also in scatter, volcano, cluster-gram, and multi-group plots. Perform any pair-wise comparison between groups of experimental replicates defining your own fold-change and statistical significance thresholds, or compare all of the groups side-by-side. The web portal also helps you correctly interpret the genomic DNA, reverse transcription efficiency, and positive PCR control wells. Make your pathway-focused gene expression analysis as quick and painless as possible with the PCR Array System and the PCR Array Data Analysis Web Portal.

Benefits:

Ease of Use: Simply upload your data and find your catalog number. Results automatically analyzed in multiple formats and annotated to your gene list.
Convenience: Web-based application requires no downloading or installation. Stay current with latest gene content and software updates.
Security: Single session-based operation means that your data is not stored on any server. Export all processed data and results to an Excel file.

To obtain more detailed instructions on using this web portal, reserve yourself a seat at one of our scheduled live web seminars, the "PCR Array Data Analysis Tutorial".

Please note that the web portal only works for PCR Arrays with the catalog number prefixes PAHS, PAMM, PARN, or most PCR Arrays ordered after August, 2007.

Downloadable Excel-based PCR Array Data Analysis Templates

*Please save the appropriate file to your computer to save entered data.

For catalog number prefixes PAHS, PAMM, PARN, PAQQ or PADM:
(Most PCR Arrays ordered after August 2007)

For 96-well & 384-well Plate Format PCR Arrays

RT² Profiler PCR Array Data Analysis Template v4.0 - Updated: June 30, 2012

Includes RT² Nano & RT² FFPE PreAMP Analysis.

NOTE: If using RT² Profiler PCR Array Data Analysis Template v3.2, please see below.

RT² RNA QC PCR Array Template v2.0

384-Well Format E/G Data Analysis Patch
Convert your 384-well raw data into four sets of 96-well data
Then cut-and-paste into the correct worksheet and cells of the Data Analysis Template

384HT (Formats E&G) RT² Profiler™ PCR Array Data Analysis Template v2.0 - Updated: June 30, 2012
For catalog # PAHS-3012E/G, PAHS/MM/RN-3803E/G, PAHS/MM/RN-3401, PAHS/MM/RN-3009

For 100-well Disc Format PCR Arrays

RT² Profiler PCR Array Data Analysis Rotor-Gene Q Template v1.0 - Updated: September 10, 2010

Includes RT² Nano & RT² FFPE PreAMP Analysis.

RT² RNA QC PCR Array Rotor-Gene Q Template v1.0

For Custom PCR Arrays - Data Analysis Patches
Convert your custom array raw data into the compatible format for your customized Data Analysis Template.

96-well	384-well
8 genes x 12 samples	8 genes x 48 samples
12 genes x 8 samples	12 genes x 32 samples
16 genes x 6 samples	16 genes x 24 samples
24 genes x 4 samples	24 genes x 16 samples
32 genes x 3 samples	32 genes x 12 samples
48 genes x 2 samples	48 genes x 8 samples
96 genes x 1 samples	64 genes x 6 samples
	96 genes x 4 samples
	128 genes x 3 samples
	192 genes x 2 samples